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ASN2FF

ASN2FF

Section: NCBI Tools User's Manual (1) Updated: 2005-05-16
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NAME

asn2ff - convert ASN.1 biological data to a flat format (old version)  

SYNOPSIS

asn2ff [-] [-A X] [-B X] [-C] [-G] [-L F] [-M] [-R] [-V F] [-a filename] [-b] [-d] [-e] [-f b/p/e/s/x/z] [-g] [-h F] [-k F] [-l filename] [-m r/d/s/c/k/l/e/p] [-n F] [-o filename] [-p F] [-q] [-r filename] [-s] [-t] [-v F] [-w] [-y] [-z]  

DESCRIPTION

asn2ff converts descriptions of biological sequences from NCBI's ASN.1 format to one of several flat-file formats. This program is built around a deprecated interface; please use asn2gbFP(1) instead.  

OPTIONS

A summary of options is included below.
-
Print usage message
-A X
Show region starting at X (default is 0)
-B X
Show region ending at X (default is last position)
-C
Show Bankit comments
-G
Output is one top bioseq only in genome view
-L F
Use old (pre-Genbank 127.0) LOCUS line format
-M
Output is map bioseqs only
-R
For GenBank Release
-V F
Don't use VERSION
-a filename
Filename for ASN.1 input (default is stdin)
-b
Input asnfile in binary mode
-d
Use SeqMgr indexing
-e
Input is a Seq-entry
-f b/p/e/s/x/z
Output Format:
b
GenBank (default)
p
GenPept
e
EMBL
s
PseudoEMBL
x
GenBankSelect
z
EMBLPEPT
-g
Show gi numbers
-h F
Hide sequence
-k F
Don't use complex sets (phy-set,mut-set, pop-set)
-l filename
Log errors to filename
-m r/d/s/c/k/l/e/p
Output mode:
r
release (default)
d
dump
s
Sequin
c
Chromoscope
k
dir-sub-debug
l
dir-sub
e
revise
p
partial report
-n F
Strict gene_binding
-o filename
Output Filename (default is stdout)
-p F
Omit new gene features
-q
Output is one top bioseq only
-r filename
Output error logfile (default is stderr)
-s
Input is a Seq-submit
-t
Show verbose message text
-v F
Suppress error messages
-w
Use HTML output format
-y
Print help format only
-z
New algorithm for orgnames
 

AUTHOR

The National Center for Biotechnology Information.  

SEE ALSO

asn2all(1), asn2asn(1), asn2fsa(1), asn2gb(1), asn2xml(1), asndhuff(1).


 

Index

NAME
SYNOPSIS
DESCRIPTION
OPTIONS
AUTHOR
SEE ALSO

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Time: 21:09:27 GMT, April 16, 2011