ASN2XML

Section: NCBI Tools User's Manual (1) Updated: 2005-05-16 Local index Up

NAME

asn2xml - translate biological data from ASN.1 to XML

SYNOPSIS

asn2xml [-] [-b F] [-e] [-i filename] [-l filename] [-o filename] [-s]

DESCRIPTION

asn2xml converts an NCBI Seq-entry or Bioseq-set from ASN.1 format to an isomorphic XML representation. It differs from asn2asn -x in that it converts packed sequence data back into human-readable ASCII text.

OPTIONS

A summary of options is included below.

-: Print usage message
-b F: Input asnfile in text mode
-e: Input is a Seq-entry
-i filename: Read ASN.1 from filename (default is stdin)
-l filename: Log errors to filename (default is stderr)
-o filename: Write XML to filename (default is stdout)
-s: Input is a Seq-submit

AUTHOR

The National Center for Biotechnology Information.

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Time: 21:09:27 GMT, April 16, 2011