-n index.ndx
Input
Index file
-s topol.tpr
Input
Run input file: tpr tpb tpa
-o potential.xvg
Output
xvgr/xmgr file
-oc charge.xvg
Output
xvgr/xmgr file
-of field.xvg
Output
xvgr/xmgr file
-[no]versionno
Print version info and quit
-nice int 19
Set the nicelevel
-b time 0
First frame (ps) to read from trajectory
-e time 0
Last frame (ps) to read from trajectory
-dt time 0
Only use frame when t MOD dt = first time (ps)
-[no]wno
View output xvg, xpm, eps and pdb files
-xvg enum xmgrace
xvg plot formatting: xmgrace, xmgr or none
-d string Z
Take the normal on the membrane in direction X, Y or Z.
-sl int 10
Calculate potential as function of boxlength, dividing the box in nr slices.
-cb int 0
Discard first nr slices of box for integration
-ce int 0
Discard last nr slices of box for integration
-tz real 0
Translate all coordinates distance in the direction of the box
-[no]sphericalno
Calculate spherical thingie
-ng int 1
Number of groups to consider
-[no]correctno
Assume net zero charge of groups to improve accuracy
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