hmmindex is a utility that creates a binary SSI ("squid sequence index" format) index for an HMM database file called database. The new index file is named database.ssi. An SSI index file is required for hmmfetch to work, and also for the PVM implementation of hmmpfam.
Master man page, with full list of and guide to the individual man pages: see hmmer(1).
For complete documentation, see the user guide that came with the distribution (Userguide.pdf); or see the HMMER web page, http://hmmer.wustl.edu/.
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine. Freely distributed under the GNU General Public License (GPL).See the file COPYING in your distribution for details on redistribution conditions.
Sean Eddy HHMI/Dept. of Genetics Washington Univ. School of Medicine 4566 Scott Ave. St Louis, MO 63110 USA http://www.genetics.wustl.edu/eddy/