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mcxalter

mcxalter

Section: USER COMMANDS (1) Updated: 28 May 2010
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mcxalter - various network transformations

mcxalter [-imx <fname> (specify matrix input)] [-abc <fname> (specify label input)] [-tab <fname> (use tab file)] [-o <fname> (output)] [-tf spec (apply tf-spec to input matrix)]

This utility supplies various transformations of networks.


2m 2m -abc <fname> (label input)
The file name for input that is in label format.


2m 2m -imx <fname> (input matrix)
The file name for input that is in mcl native matrix format.


2m 2m -tab <fname> (use tab file)
This option causes the output to be printed with the labels found in the tab file. With -abc this option will, additionally, construct a graph only on the labels found in the tab file. If this option is used in conjunction with -imx the tab domain and the matrix domain are required to be identical.


2m 2m -tf <tf-spec> (transform input matrix values)
Transform the input matrix values according to the syntax described in mcxio(5).


2m 2m -o fname (output file)
Output file.

Stijn van Dongen.

mcxio(5), mcx(1), mcxsubs(1), and mclfamily(7) for an overview of all the documentation and the utilities in the mcl family.


This document was created by man2html, using the manual pages.
Time: 21:23:48 GMT, April 16, 2011