mcxalter [-imx <fname> (specify matrix input)] [-abc <fname> (specify label input)] [-tab <fname> (use tab file)] [-o <fname> (output)] [-tf spec (apply tf-spec to input matrix)]
This utility supplies various transformations of networks.
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-abc <fname> (label input)
The file name for input that is in label format.
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-imx <fname> (input matrix)
The file name for input that is in mcl native matrix format.
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-tab <fname> (use tab file)
This option causes the output to be printed with the labels
found in the tab file.
With -abc this option will, additionally, construct
a graph only on the labels found in the tab file.
If this option is used in conjunction with -imx the
tab domain and the matrix domain are required to be identical.
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-tf <tf-spec> (transform input matrix values)
Transform the input matrix values according
to the syntax described in mcxio(5).
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-o fname (output file)
Output file.
Stijn van Dongen.
mcxio(5), mcx(1), mcxsubs(1), and mclfamily(7) for an overview of all the documentation and the utilities in the mcl family.