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MINCPIK

MINCPIK

Section: MINC User's Guide (1) Updated: $Date: 2009/08/11 13:49:19 $
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NAME

mincpik - generate images from minc files

 

SYNOPSIS

mincpik [options] <infile>.mnc [<image.type>]

 

DESCRIPTION

mincpik generates image files from MINC volumes using the Imagemagick convert utility. For a complete list of output file types see the convert man pages.

Currently if there is a time dimension in the file the image will only produced from the first time point

 

General options

-verbose
print out extra information
-clobber
overwrite the output file if it exists already
-fake
usually used in combination with -verbose to echo commands only
-slice
slice number to get (note this is in voxel co-ordinates)
-scale
scaling factor for resulting image, by default images are output at twice their original resolution
-width
autoscale the resulting image to have a fixed image width (in pixels)
-depth
bit-depth for resulting image 8 or 16 (MSB machines only)
-title
add a title to the resulting image, if just this option is specified the text used for the title is the name of the input image file. -title_text specify the title text to use. This option must be used in conjunction with -title
 

Image range and lookup table options

-range min max
valid range of values to use from MINC file
-image_range min max
range of image values to use for pixel intensity
-auto_range
automatically determine image range using a 5 and 95% PcT. (histogram)
-lookup arguments
arguments to pass to minclookup

 

Slicing options

-transverse
get a transverse slice
-axial
synonym for transverse
-coronal
get a coronal slice
-sagittal
get a sagital slice
-allthree
this option is deprecated, use -triplanar instead

 

Triplanar options

-triplanar
create a triplanar view of the input MINC file
-tilesize
pixel size for each image in a triplanar
-sagittal_offset
offset the saggital slice from the centre in the triplanar
-vertical
create a vertical triplanar series of images (this is the default)
-horizontal
create a horizontal triplanar instead of a vertical one

 

Generic options for all commands:

-help
Print summary of command-line options and abort.

 

AUTHOR

Andrew Janke - <a.janke@gmail.com>

 

SEE ALSO

minclookup(1), convert(1), display(1).


 

Index

NAME
SYNOPSIS
DESCRIPTION
General options
Image range and lookup table options
Slicing options
Triplanar options
Generic options for all commands:
AUTHOR
SEE ALSO

This document was created by man2html, using the manual pages.
Time: 21:23:54 GMT, April 16, 2011