MRtrix - diffusion-weighted MRI white matter tractography
MRtrix is a set of tools to perform diffusion-weighted MRI white matter
tractography of the brain in the presence of crossing fibres, using Constrained
Spherical Deconvolution, and a probabilisitic streamlines algorithm. Magnetic
resonance images in DICOM, ANALYZE, or uncompressed NIfTI format are supported.
All MRtrix programs are installed in /usr/lib/mrtrix/bin. You either have to
call them with their full path, or extend the search path by this directory.
The MRtrix documentation has information on how to do that for a number of
popular environments. Please note that it is not necessary to modify
LD_LIBRARY_PATH -- despite the advice in the MRtrix manual.