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PC-COMPARE

PC-COMPARE

Section: Probcons Manual (1) Updated: 2007-04-04
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NAME

pc-compare - Program for scoring alignments according to a reference alignment with respect to sum-of-pairs and column scores.  

SYNOPSIS

pc-compare [TEST_ALIGNMENT] [REFERENCE_ALIGNMENT] [BALIBASE_ANNOT_FILE] [-col] [-core] [-caps] [-annot FILENAME]
 

NOTE

pc-compare is named compare in the original sources, but has been remamed to avoid collision with other program names.  

SEE ALSO

pc-makegnufile(1), pc-project(1),from the probcons-extra package, and probcons(1) and probcons-RNA(1) from the probcons package.  

REFERENCE

Please cite Do, C.B., Mahabhashyam, M.S.P., Brudno, M., and Batzoglou, S. 2005. PROBCONS: Probabilistic Consistency-based Multiple Sequence Alignment. Genome Research 15: 330-340.  

AUTHORS

Chuong Do <chuongdo@cs.stanford.edu>

Wrote probcons in collaboration with Michael Brudno in the research group of Serafim Batzoglou, Department of Computer Science, Stanford University.

Charles Plessy <charles-debian-nospam@plessy.org>

Wrote this manpage in DocBook XML for the Debian distribution.
 

COPYRIGHT

This program and its manpage are in the public domain.


 

Index

NAME
SYNOPSIS
NOTE
SEE ALSO
REFERENCE
AUTHORS
COPYRIGHT

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Time: 21:24:36 GMT, April 16, 2011