Section: User Commands (1) Updated: Mon, 21 Mar 2005 21:44:15 -0300 Local index
sim2gff - Converts SIM file into GFF formatted records
[-frxyHh] sim_file > gff_file
This manual page documents briefly the
sim2gff is a program written in Perl that converts SIM file into GFF formatted records (for use with gff2aplot and gff2javaplot).
- -h, --help
Show summary of options.
Output is written to a file named <sim_file>.gff.
Interchange the order of sequences (Seq1 on y-axis, Seq2 on x-axis).
- -x <name>
Specify the species name for species1 (default: "Seq1").
- -y <name>
Specify the species name for species2 (default: "Seq2").
Use the fasta file headers for species labels.
The following perl-like exit status are returned:
sim2gff was written by Thomas Wiehe <firstname.lastname@example.org>.
This manual page was written by Nelson A. de Oliveira <email@example.com>,
for the Debian project (but may be used by others).
- EXIT STATUS
- SEE ALSO
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Time: 21:25:53 GMT, April 16, 2011