Section: User Commands (1) Updated: Mon, 01 Aug 2005 15:28:08 -0300 Local index
weight - calculates sequence weights for an alignment
[-options] <alignment file>
This manual page documents briefly the
weight is a program that calculates weights for a sequence alignment.
Use BLOSUM weighting scheme at <f> fractional identity.
Filter out seqs w/ fractional ident > <x> [0-1].
Help; print version and usage info.
Save weight-annotated alignment in <outfile>.
Use position based weight scheme (Henikoff & Henikoff).
Sample <n> sequences at random into a new alignment.
Use Voronoi weight scheme (Sibbald & Argos).
Specify alignment file format <s>.
Allowed formats: SELEX, MSF, Clustal, a2m, PHYLIP.
Suppress verbose banner.
HHMI/Department of Genetics
Washington University School of Medicine
4444 Forest Park Blvd., Box 8510
St Louis, MO 63108 USA
FAX : 1-314-362-2157
This manual page was written by Nelson A. de Oliveira < firstname.lastname@example.org>,
for the Debian project (but may be used by others).
This document was created by
using the manual pages.
Time: 21:26:56 GMT, April 16, 2011